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Brian F. Volkman, Ph.D. - Publications

  1. Ellman, J. A., Volkman, B. F., Mendel, D., Schultz, P. G., and Wemmer, D. E., Site-Specific Isotopic Labeling of Proteins for NMR Studies, (1992) J. Am. Chem. Soc. 114, 7959-7961.
  2. Geierstanger, B. H., Volkman, B. F., Kremer, W., and Wemmer, D. E., Short Peptide Fragment Derived from HMG-I/Y Proteins Bind Specifically to the Minor Groove of DNA (1994) Biochemistry 33, 5347-5355.
  3. Volkman, B.F., Nohaile, M.J., Amy, N.K., Kustu, S., Wemmer, D.E. Three-dimensional Solution Structure of the N-terminal Receiver Domain of NTRC, (1995) Biochemistry 34, 1413.
  4. Volkman, B. F. and Wemmer, D. E., Deletion of a single amino acid changes the folding of an apamin hybrid sequence peptide to that of endothelin (1997) Biopolymers, 41, 451-460.
  5. Lee, A. L., Volkman, B. F., Robertson, S. A, Rudner, D. Z., Barbash, D., Cline, T. W., Kanaar, R., Rio, D. C., Wemmer, D. E., Chemical Shift Mapping of the RNA-Binding Interface of the Multiple-RBD Protein Sex-Lethal, (1997) Biochemistry, 36, 14306-14317.
  6. Chivers, P. T., Prehoda, K. E., Volkman, B. F., Kim, B.-M., Markley, J. L., Raines, R. T. Microscopic pKa Values of Escherichia coli Thioredoxin (1997) Biochemistry, 36, 14985-14991.
  7. Volkman, B. F., Prantner, A. M., Wilkens, S. J., Xia, B., Markley, Assignment of 1H, 13C, and 15N signals of oxidized Clostridium pasteurianum rubredoxin, (1997) J. L., J. Biomol. NMR, 10, 409-410
  8. Prantner, A. M., Volkman, B. F., Wilkens, S. J., Xia, B., Markley, J. L., Assignment of 1H, 13C, and 15N signals of reduced Clostridium pasteurianum rubredoxin: oxidation state-dependent changes in chemical shifts and relaxation rates (1997) J. Biomol. NMR, 10, 411-412.
  9. Xia, B., Volkman, B. F., and Markley, J. L. Evidence for Oxidation-State-Dependent Conformational Changes in Human ferredoxin from Multinuclear, Multidimensional NMR Spectroscopy (1998) Biochemistry, 37, 3965-3973.
  10. Geierstanger, B. H., Jamin, M., Volkman, B. F. and Baldwin, R. L., Protonation behavior of histidine 24 and histidine 119 in forming the pH 4 folding intermediate of apomyoglobin (1998) Biochemistry, 37, 4254-4265.
  11. Alam, S. L., Volkman, B. F., Markley, J. L. and Satterlee, J. D., Detailed NMR Analysis of the Heme-Protein Interactions in Component IV Glycera dibranchiata monomeric hemoglobin-CO (1998) J. Biomol NMR, 11, 119-133.
  12. Volkman, B. F., Alam, S. L., Satterlee, J. D. and Markley, J. L., Solution Structure and Backbone Dynamics of Component IV-Glycera dibranchiata monomeric hemoglobin-CO, (1998) Biochemistry, 37, 10906-10919.
  13. Chylla, R. A., Volkman, B. F. and Markley, J. L., Practical model fitting approaches to the direct extraction of NMR parameters simultaneously from all dimensions of multidimensional NMR spectra (1998) J. Biomol. NMR, 12, 277-297.
  14. Dangi, B., Blankman, J. I., Miller, C. J., Volkman, B. F., and Guiles, R. D., Contribution of Backbone Dynamics to Entropy Changes Occurring on Oxidation of Cytochrome b5; Can Redox Linked Changes in Hydrogen Bond Networks Modulate Reduction Potentials? (1998) J. Phys. Chem, 102B, 8201-8208.
  15. Wilkens, S. J., Xia, B., Volkman, B. F., Weinhold, F., Markley, J. L. and Westler, W. M., Refutation of the point-dipole approximation for the electron-nuclear relaxation in NMR of paramagnetic proteins: NMR and hybrid density functional calculations in high-spin Fe(III) rubredoxin (1998) J. Phys. Chem, 102B, 8300-8305.
  16. Beger, R. D., Marathias, V. M., Volkman, B. F., and Bolton, P. H., Determination of internuclear angles of DNA using paramagnetic alignment (1998) J. Magn. Reson., 135, 256-259.
  17. Volkman, B. F., Anderson, M. E., Clark, K. D., Hayakawa, Y., Strand, M. R., and Markley, J. L. Structure of the Insect Cytokine Peptide PSP-1 from Pseudoplusia includens, (1999) J. Biol. Chem., 274, 4493-4496.
  18. Babu, C. R., Volkman, B. F., Bullerjahn, G. S. NMR solution structure of plastocyanin from the photosynthetic prokaryote, Prochlorothrix hollandica, (1999) Biochemistry, 38, 4988-4995.
  19. Volkman, B. F., Wilkens, S. J., Lee, A. L., Xia, B., Westler, W. M., Beger, R. D., and Markley, J. L. Redox-dependent magnetic alignment of Clostridium pasterianum rubredoxin: measurement of magnetic susceptibility anisotropy and prediction of pseudocontact shift contributions, (1999) J. Am. Chem. Soc., 121, 4677-4683.
  20. Kern, D., Volkman, B. F., Luginbuhl, P., Nohaile, M. J., Kustu, S. and Wemmer, D. E. Structure of a transiently phosphorylated switch in bacterial signal transduction, (1999) Nature, 402, 894-898.
  21. Lytle, B. L., Volkman, B. F., Westler, W. M. and Wu, J. H. D., Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy, (2000) Arch. Biochem. Biophys., 379, 237-244.
  22. Baldisseri, D. M., Margolis, J. W., Omotosho, P. A., Volkman, B. F., Margolis, F.L., Sequence-specific NMR resonance assignments of the backbone atoms for the olfactory marker protein, OMP (2000) J. Biomol. NMR, 4, 353-354.
  23. Volkman, B. F., Lipson, D., Wemmer, D. E., and Kern, D., Two-state allosteric behavior in a single domain signaling protein (2001) Science 291, 2429-2433.
  24. Lytle, B. L., Volkman, B. F., Westler, W. M., and Wu, J. H. D., Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain, (2001) J. Mol. Biol. 307, 745-753.
  25. Clark, K. D., Volkman, B. F., Thoetkiattikul, King, D. S., Hayakawa, Y., and Strand, M. R., Alanine-scanning Mutagenesis of Plasmatocyte Spreading Peptide Identifies Critical Residues for Biological Activity, (2001) J. Biol. Chem., 276, 18491-18496.
  26. Volkman, B. F., Zhang, Q., Debabov, D., Rivera, E., Kresheck, G., and Francis C. Neuhaus, F. C., Biosynthesis of D-alanyl-lipoteichoic acid: The tertiary structure of apo-D-alanyl carrier protein, (2001) Biochemistry, 40, 7964-7972.
  27. Clark K. D., Volkman, B. F., Thoetkiattiku, H., Hayakawa, Y., and Strand, M. R., N-terminal residues of plasmatocyte spreading peptide possess specific determinants required for biological activity, (2001) J. Biol. Chem., 276, 37431-37435.
  28. Kuloglu, ES, McCaslin, DR, Kitabwalla, M, Pauza, CD, Markley, JL and Volkman, BF, Monomeric Solution Structure of the Prototypical 'C' Chemokine Lymphotactin, (2001) Biochemistry 40 12486-12496.
  29. Tikhonov, I., Kitabwalla, M., Wallace, M., Malkovsky, M., Volkman, B. F., and Pauza, C. D., Staphylococcal superantigens induce lymphotactin production by human CD4+ and CD8+ T cells, (2001) Cytokine, 16, 73-8.
  30. Markley, J. L., Ulrich, E. L., Westler, W. M., and Volkman, B. F., Macromolecular Structure Determination by NMR, (2002). In Structural Bioinformatics (H. Weissig, and P. Bourne,eds.), Wiley and Sons, New York.
  31. Skjeldal, L., Gran, L, Sletten, K. and Volkman, B. F., Refined Structure and Metal Binding Site of the Kalata B1 Peptide, (2002) Archives of Biochemistry and Biophysics, 399, 142-148.
  32. Kuloglu, E.S., McCaslin, D.R., Markley, J.L. and Volkman, B.F., Structural rearrangement of human lymphotactin, a C chemokine, under physiological solution conditions, (2002) J. Biol. Chem., 277, 17863-70.
  33. Goodfellow, B. J., Nunes, S., Rusnak, F., Moura, I., Ascenso, C., Moura, J. J. G., Volkman, B. F., and Markley, J. L., Pseudocontact shifts in a mixed metal form of Desulfovibrio gigas desulforedoxin, (2002) Prot. Sci., 11, 2464-2470.
  34. Volkman, B. F., Prehoda, K. E., Scott, J. A., Peterson, F. C. and Lim, W. A. Structure of the N-WASP EVH1 Domain-WIP Complex: Insight into the Molecular Basis of Wiskott-Aldrich Syndrome, (2002) Cell, 111, 565-576.
  35. Markley, J.L., Ulrich, E.L., Westler, W.M., Volkman, B.F., Macromolecular structure determination by NMR spectroscopy (2003) Methods Biochem. Anal. 44, 89-113.
  36. Gardino, A.K., Volkman, B.F., Cho, H.S., Lee, S.Y., Wemmer, D.E., Kern, D. The NMR solution structure of BeF(3)(-)-activated Spo0F reveals the conformational switch in a phosphorelay system (2003) J Mol Biol 331 245-254.
  37. Cook, C.R., Kung, G., Peterson, F.C., Volkman, B.F., Lei, M. A novel zinc-finger is required for Mcm10 homocomplex assembly (2003) J Biol Chem 278 36051-8.
  38. Zolnai Z, Lee PT, Li J, Chapman MR, Newman CS, Phillips GN Jr, Rayment I, Ulrich EL, Volkman BF, Markley JL Project management system for structural and functional proteomics: Sesame (2003) J Struct Funct Genomics 4 11-23.
  39. Peterson FC, Elgin ES, Nelson TJ, Zhang F, Hoeger TJ, Linhardt RJ, Volkman BF Identification and characterization of a glycosaminoglycan recognition element of the C chemokine lymphotactin (2004) J Biol Chem 279 12598-604.
  40. Lytle BL, Peterson FC, Kjer KL, Frederick RO, Zhao Q, Thao S, Bingman C, Johnson KA, Phillips GN Jr, Volkman BF Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana J Biomol NMR (2004) 28 397-400.
  41. Peterson FC, Penkert RR, Volkman BF, Prehoda KE Cdc42 regulates the Par-6 PDZ domain through an allosteric CRIB-PDZ transition Mol Cell (2004) 13 665-76.
  42. Zhao Q, Frederick R, Seder K, Thao S, Sreenath H, Peterson F, Volkman BF, Markley JL, Fox BG Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N J Struct Funct Genomics (2004) 5 87-93.
  43. Bingman CA, Johnson KA, Peterson FC, Frederick RO, Zhao Q, Thao S, Fox BG, Volkman BF, Jeon WB, Smith DW, Newman CS, Ulrich EL, Hegeman A, Sussman MR, Markley JL, Phillips GN Jr Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana Proteins (2004) 57 218-20.
  44. Smith DW, Johnson KA, Bingman CA, Aceti DJ, Blommel PG, Wrobel RL, Frederick RO, Zhao Q, Sreenath H, Fox BG, Volkman BF, Jeon WB, Newman CS, Ulrich EL, Hegeman AD, Kimball T, Thao S, Sussman MR, Markley JL, Phillips GN Jr Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana Proteins (2004) 57 854-857.
  45. Lytle BL, Peterson FC, Qiu SH, Luo M, Zhao Q, Markley JL, Volkman BF Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B J Biol Chem (2004) 279 46787-93.
  46. Skjeldal L, Peterson FC, Doreleijers JF, Moe LA, Pikus JD, Westler WM, Markley JL, Volkman BF, Fox BG ion structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex J Biol Inorg Chem (2004) 9 945-953.
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Last modified on: Monday, 06-Dec-2004 20:56:19 CST